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Sequence dependence of structural perturbations to DNA induced by aflatoxin B1 formamidopyrimidine lesions

dc.creatorLi, Liang
dc.date.accessioned2020-08-22T20:43:47Z
dc.date.available2016-11-06
dc.date.issued2014-11-06
dc.identifier.urihttps://etd.library.vanderbilt.edu/etd-08052014-115231
dc.identifier.urihttp://hdl.handle.net/1803/13830
dc.description.abstractAflatoxin B1 (AFB1), a mycotoxin produced by Aspergillus flavus, is oxidized by cytochrome P450 enzymes to aflatoxin B1-8,9-epoxide, which alkylates DNA at N7-dG. Under basic conditions, this N7-dG adduct rearranges to yield the trans-8,9-dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy aflatoxin B1 (AFB1-FAPY) adduct. This adduct exhibits geometrical isomerism involving the formamide moiety. NMR analyses of duplex oligodeoxynucleotides containing the 5′-XA-3′, 5′-XC-3′, 5′-XT-3′ and 5′-XY-3′ sequences (X= AFB1-FAPY; Y=7-deaza-dG) demonstrate that the equilibrium between (E) and (Z) isomers of the AFB1-FAPY adduct is controlled by major groove hydrogen bonding interactions. Structural analysis of the AFB1-FAPY adduct in the 5′-XA-3′ sequence indicates the preference of the (E) geometrical isomer of the formyl group, which is attributed to formation of a hydrogen bond between the AFB1-FAPY formyl group and the N6 exocyclic amino group of the 3ʹ-neighbor adenine. While the 5′-XA-3′ sequence exhibits the (E) isomer, the 5′-XC-3′ sequence exhibits a 7:3 (E):(Z) ratio at equilibrium at 283 K. The (E) isomer is stabilized by the formation of a hydrogen bond between the formyl group and the N4-dC exocyclic amino group of the 3'-neighbor cytosine. In contrast, the 5′-XT-3′ and 5′-XY-3′ sequences cannot form such a hydrogen bond between the formyl group and the 3′-neighbor T or Y, respectively, and the (Z) geometrical isomer is favored. In contrast, the equilibria between alpha and beta anomers of the AFB1-FAPY adduct and the potential for atropisomerism about the C5-N5 bond do not depend upon sequence. Each of these four sequences features the AFB1 moiety intercalated above the 5'-face of the damaged base. This enforces the Ra axial conformation for the C5-N5 bond. Each of the four AFB1-FAPY adducts maintains the beta deoxyribose anomeric configuration.
dc.format.mimetypeapplication/pdf
dc.subjectGeometrical isomer
dc.subjectAflatoxin
dc.titleSequence dependence of structural perturbations to DNA induced by aflatoxin B1 formamidopyrimidine lesions
dc.typedissertation
dc.contributor.committeeMemberBrian O Bachmann
dc.contributor.committeeMemberFrederick P Guengerich
dc.contributor.committeeMemberCarmelo J Rizzo
dc.type.materialtext
thesis.degree.namePHD
thesis.degree.leveldissertation
thesis.degree.disciplineChemistry
thesis.degree.grantorVanderbilt University
local.embargo.terms2016-11-06
local.embargo.lift2016-11-06
dc.contributor.committeeChairMichael P. Stone


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